PUBLICATIONS

PUBLICATIONS

原著論文

  1. Taguchi, Y., Nakaya, T., Aizawa, K., Noguchi, Y., Maiya, N., Iwamoto, C., Ohba, K., Sugawara, M., Murata, M., Nagai, R., Kano, F. (2024) Peptide mimetic NC114 induces growth arrest by preventing PKCδ activation and FOXM1 nuclear translocation in colorectal cancer cells. FEBS Open Bio, Volume 14, Issue 4, 695-720. doi: 10.1002/2211-5463.13784

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  2. Taguchi, Y., Ito, K., Kano, F. (2023) PKM2 controls the translation of TFE3 to maintain the integrity of the Golgi apparatus for the survival of HeLa and ME-180 cervical cancer cells. The FEBS Journal, Volume 290, Issue 12, 3221-3242. doi: 10.1111/febs.16740

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  3. Nakatsu, D., Kunishige, R., Taguchi, Y., Shinozaki-Narikawa, N., Osaka, K., Yokomizo, K., Ishida, M., Takei, S., Yamasaki, S., Hagiya, K., Hattori, K., Tsukamoto, T., Murata, M., Kano, F. (2023) BMP4-SMAD1/5/9-RUNX2 pathway activation inhibits neurogenesis and oligodendrogenesis in Alzheimer’s patients’ iPSCs in senescence-related conditions. Stem Cell Reports, Volume 18, 688-705. doi: 10.1016/j.stemcr.2023.01.004.

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  4. Kunishige, R., Murata, M., Kano, F. (2022) Targeted protein degradation by Trim-Away using cell resealing coupled with microscopic image-based quantitative analysis. Frontiers in Cell and Developmental Biology, Volume 10, Article number: 1027043. doi: 10.3389/fcell.2022.1027043

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  5. Noguchi Y, Murakami M, Murata M, Kano F. (2022) Microscopic image-based classification of adipocyte differentiation by machine learning. Histochem. Cell Biol., Volume 159, Issue 4, 313–327. doi: 10.1007/s00418-022-02168-z

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  6. Noguchi, Y., Kano, F., Maiya, N., Iwamoto, C., Yamasaki, S., Otsubo, Y., Nakatsu, D., Kunishige, R., Murata, M. (2021) Microscopic image-based covariation network analysis for actin scaffold-modified insulin signaling. iScience, Volume 24, Issue 7, Article number: 102724. doi: 10.1016/j.isci.2021.102724

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    プレスリリース

  7. Sonoda, Y., Kano, F., Murata, M. (2021) Applications of cell resealing to reconstitute microRNA loading to extracellular vesicles. Sci. Rep., 11, Article number: 2900. doi: 10.1038/s41598-021-82452-5

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  8. Fushimi, K., Hoshino, H., Shinozaki-Narikawa, N., Kuwasaki, Y., Miyake, K., Nakajima, T., Sato, M., Kano, F., Narikawa, R. (2020) The Cruciality of Single Amino Acid Replacement for the Spectral Tuning of Biliverdin-Binding Cyanobacteriochromes. Int. J. Mol. Sci., 21 (17):6278. doi: 10.3390/ijms21176278.

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  9. Nakatsu, D., Kano, F., Shinozaki-Narikawa, N., Murata, M. (2019) Pyk2-dependent phosphorylation of LSR enhances localization of LSR and tricellulin at tricellular tight junctions. PLOS ONE. 14 (10):e0223300. doi: 10.1371/journal.pone.0223300

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  10. Kano, F., Murata, M. (2019) Phosphatidylinositol-3-phosphate-mediated actin domain formation linked to DNA synthesis upon insulin treatment in rat hepatoma-derived H4IIEC3 cells. Biochim. Biophys. Acta (BBA) – Mol. Cell Res., 1866 (5): 793-805. doi: 10.1016/j.bbamcr.2019.02.005.

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  11. Ogasawara, F., Kano, F., Murata, M., Kimura, Y., Kioka, N., Ueda, K. (2019) Changes in the asymmetric distribution of cholesterol in the plasma membrane influence streptolysin O pore formation. Sci. Rep., 9, Article number: 4548. doi: 10.1038/s41598-019-39973-x

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  12. Watanabe-Takahashi M, Yamasaki S, Murata M, Kano F, Motoyama J, Yamate J, Omi J, Sato W, Ukai H, Shimasaki K, Ikegawa M, Tamura-Nakano M, Yanoshita R, Nishino Y, Miyazawa A, Natori Y, Toyama-Sorimachi N, Nishikawa K. (2018) Exosome-associated Shiga toxin 2 is released from cells and causes severe toxicity in mice. Sci. Rep. 17, Article number: 10776. doi: 10.1038/s41598-018-29128-9.

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  13. Murakami, M., Kano, F., Murata, M. (2018) LLO-mediated cell resealing system for analyzing intracellular activity of membrane-impermeable biopharmaceuticals of mid-sized molecular weight. Sci. Rep. 8, Article number: 1946. doi:10.1038/s41598-018-20482-2.

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  14. Kano, F., Noguchi, Y., Murata, M. (2017) Establishment and phenotyping of disease model cells created by cell-resealing technique. Sci. Rep. 7, Article number: 15167. doi:10.1038/s41598-017-15443-0.

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  15. Yamaoki, Y., Kiyoishi, A., Miyake, M., Kano, F., Murata, M., Nagata T., Katahira, M. (2017) The first successful observation of in-cell NMR signals of DNA and RNA in living human cells. Phys. Chem. Chem. Phys. doi:10.1039/C7CP05188C.

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  16. Horiuchi, Y., Nakatsu, D., Kano, F., Murata, M. (2017) Pyruvate kinase M1 interacts with A-Raf and inhibits endoplasmic reticulum stress-induced apoptosis by activating MEK1/ERK pathway in mouse insulinoma cells. Cell. Signal. 38 : 212–222. doi: 10.1016/j.cellsig.2017.07.017.

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  17. Taguchi, Y., Horiuchi, Y., Kano, F., Murata, M. (2017) Novel prosurvival function of Yip1A in human cervical cancer cells: constitutive activation of the IRE1 and PERK pathways of the unfolded protein response. Cell Death and Disease. 8, e2718. doi:10.1038/cddis.2017.147.

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  18. Matsuto, M., Kano, F., Murata, M. (2015) Reconstitution of the targeting of Rab6A to the Golgi apparatus in semi-intact HeLa cells: A role of BICD2 in stabilizing Rab6A on Golgi membranes and a concerted role of Rab6A/BICD2 interactions in Golgi-to-ER retrograde transport. Biochimica et Biophysica Acta (BBA) – Molecular Cell Research. 1853 (10): 2592–2609. doi:10.1016/j.bbamcr.2015.05.005.

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  19. Taguchi, Y., Imaoka, K., Kataoka, M., Uda, A., Nakatsu, D., Horii-Okazaki, S., Kunishige, R., Kano, F., Murata, M. (2015) Yip1A, a Novel Host Factor for the Activation of the IRE1 Pathway of the Unfolded Protein Response during Brucella infection. PLOS Pathogens. doi: 10.1371/journal.ppat.1004747.

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  20. Arai, T., Kano, F., Murata, M. (2015) Translocation of forkhead box O1 to the nuclear periphery induces histone modifications that regulate transcriptional repression of PCK1 in HepG2 cells. Genes Cells. 20 (4): 340-357. doi: 10.1111/gtc.12226.

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  21. Nakatsu, D., Horiuchi, Y., Kano, F., Noguchi, Y., Sugawara, T., Takamoto, I., Kubota, N., Kadowaki, T., Murata, M. (2015) L-cysteine reversibly inhibits glucose-induced biphasic insulin secretion and ATP production by inactivating PKM2. Proc. Natl. Acad. Sci. USA. 112 (10): E1067-1076. doi: 10.1073/pnas.1417197112.

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  22. Sugawara, T., Kano, F., Murata, M. (2014) Rab2A is a pivotal switch protein that promotes either secretion or ER-associated degradation of (pro)insulin in insulin-secreting cells. Scientific Reports. 4. Article number: 6952. doi:10.1038/srep06952.

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  23. Nakatsu, D., Kano, F., Taguchi, Y., Sugawara, T., Nishizono, T., Nishikawa, K., Oda, Y., Furuse, M., Murata, M. (2014) JNK1/2-dependent phosphorylation of angulin-1/LSR is required for the exclusive localization of angulin-1/LSR and tricellulin at tricellular contacts in EpH4 epithelial sheet. Genes Cells. 19 (7): 565-581. doi: 10.1111/gtc.12158.

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  24. Fujiki, K., Shinoda, A., Kano, F., Sato, R., Shirahige, K., Murata, M. (2013) PPARγ-induced PARylation promotes local DNA demethylation by production of 5-hydroxymethylcytosine. Nature Communications. 4. Article number: 2262. doi:10.1038/ncomms3262.

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  25. Kano, F., Murata, M. (2013) The Semi-Intact Cell System and Methods for Cell Resealing: a Novel Systems Biology Tool to Elucidate Protein Networks with Spatio-Templioral Information. Advances in Systems Biology. 2(1): 6-14.

  26. Kano, F., Nakatsu, D., Noguchi, Y., Yamamoto, A., Murata, M. (2012) A Resealed-Cell System for Analyzing Pathogenic Intracellular Events: Perturbation of Endocytic Pathways under Diabetic Conditions. PLoS ONE. 7(8):e44127.

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  27. Murata, M., Kano, F. (2012) Hydrogen peroxide depletes phosphatidylinositol-3-phosphate from endosomes in a p38MAPK-dependent manner and perturbs endocytic transports and signal transduction in pathogenic cells. in Hydrogen Peroxide: Detection, Application and Health Implications. Nova Science Publishers.(Aguilar, G. and Guzman, R.A. ed.) Nova Publishers (ISBN 978-1-62257-415-5)

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  28. Murata, M., Kano, F. (2012) Semi-intact cell system: Application to the nalysis of membrane trafficking beween the endoplasmic reticulum and the Golgi apparatus and of cell cycle-dependent changes in the morphology of these organelles. in Crosstalk and Integration of Membrane Trafficking Pathways. (Weigert, R. ed.) INTECH (ISBN 978-953-51-0515-2)

  29. Sugawara, T., Nakatsu, D., Kii, H., Maiya, N., Adachi, A., Yamamoto, A., Kano, F., Murata, M. (2012) PKCd and e regulate the morphological integrity of the ER-Golgi intermediate compartment (ERGIC) but not the anterograde and retrograde transports via the Golgi apparatus. Biochem. Biophys. Acta (Molecular Cell Research), 1823(4):861-875.

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  30. Al Awabdh, S., Miserey-Lenkei, S., Bouceba, T., Masson, J., Kano, F., Marinach-Patrice, C., Hamon, M., Emerit, M.B., Darmon, M. (2012) A new vesicular scaffoldig complex mediates the G-protein coupled 5-HT1A receptor targeting to neuronal dendrites. J. Neurosci., 32(41):14227-14241.

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  31. Kano F, Arai T, Matsuto M, Hayashi H, Sato M, and Murata M. (2011). Hydrogen peroxide depletes phosphatidylinositol-3-phosphate from endosomes in a p38 MAPK-dependent manner and perturbs endocytosis. Biochim Biophys Acta. (Molecular Cell Research), 1813(5):784-801.

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  32. Adachi A, Kano F, Tsuboi T, Fujita M, Maeda Y, and Murata M. (2010). Golgi-associated GSK3beta retulates the sorting process of post-Golgi membrane trafficking. J. Cell Sci. 123(19):3215-3225.

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  33. Watanabe-Takahashi, M., Sato, T., Dohi, T., Noguchi, N., Kano, F., Murata, M., Hamabata, T., Natori, Y. and Nishikawa, K. (2010). An orally applicable Shiga toxin-neutralizer functions in the intestine to inhibit the intracellular transport of the toxin. Infect. Immun. 78(1):177-183.

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  34. Fujimura, K., Katahira, J., Kano, F., Yoneda, Y. and Murata, M. (2009). Microscopic dissection of the process of stress granule assembly. Biochem. Biophys. Acta (Molecular Cell Research), 1793(11):1728-1737.

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  35. Morikawa, R.K., Aoki, J. Tani, K., Tagaya, M., Kano, F., Murata, M., Yamamoto, A., Tsujimoto, M., Arai, H. (2009). Intracellular Phospholipase A1 iPLA1gamma is a Novel Factor Involved in COPI- and Rab6-Independent Retrograde Transport between the ER and the Golgi Complex. J. Biol. Chem. 284(39):26620-26630.

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  36. Fujiki, K., Kano, F., Shiota, K., and Murata, M. (2009). Expression of the PPARγ gene ts repressed by DNA methylation in visceral adipose tissue of mouse models of diabetes. BMC Biology, Jul 10;7(1):38.

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  37. Kano, F., Yamauchi, S., Yoshida, Y., Watanabe-Takahashi, M., Nishikawa, K., Nakamura, N., and Murata, M. (2009). Yip1A regulates the COPI-independent retrograde transport form the Golgi apparatus to the endoplasmic reticulum. J. Cell Sci. 122:2218-2227.

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  38. Fujimura, K., Katahira, J., Kano, F., Yoneda, Y., and Murata, M. (2009). Selective localization of PCBP2 to cytoplasmic processing bodies. Biochim. Biophys. Acta (Molecular Cell Research), 1793(5):878-887.

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  39. Adachi, A., Kano, F., Saido, T.C., and Murata M. (2009). Visual screening and analysis for kinase-regulated membrane trafficking pathways that are involved in extensive beta-amyloid secretion. Genes Cells. 14, 355-369.

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  40. Tanaka, A.R., Kano, F. ,Yamamoto, A., Ueda, K. and Murata, M. (2008) Formation of cholesterol-enriched structures by aberrant intracellular accumulation of ABCA1. Genes to Cells. 13(8):889-904.

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  41. Tanaka, A.R., Kano, F., Ueda, K. and Murata, M. (2008) The ABCA1 Q597R mutant undergoes trafficking from the ER upon ER stress. Biochem. Biophys. Res. Commun. 369:1174-1178.

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  42. Fujimura, K., Kano, F. and Murata, M.(2008) Identification of PCBP2, a Facilitator of IRES-Mediated Translation, as a Novel Constituent of Stress Granule and Processing Body. RNA 14(3):425-431.

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  43. Fujimura, K., Kano, F. and Murata, M. (2008) Dual localization of the RNA binding protein CUGBP-1 to stress granule and perinuceolar compartment. Exp. Cell Res. 314(3):543-553.

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  44. Kihara, T., Kano, F. and Murata, M. (2008) Modulation of SRF-dependent gene expression by association of SPT16 with MKL1. Exp. Cell Res. 314:629-637.

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  45. Kano F, Kondo H, Yamamoto A, Kaneko Y, Uchiyama K, Hosokawa N, Nagata K, and Murata M. (2005) NSF/SNAPs and p97/p47/VCIP135 are sequentially required for cell cycle-dependent reformation of the ER network. Genes Cells: 10, 989-999.

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  46. Kano F, Kondo H, Yamamoto A, Tanaka AR, Hosokawa N, Nagata K, and Murata M. (2005) The maintenance of the endoplasmic reticulum network is regulated by p47, a cofactor of p97, through phosphorylation by cdc2 kinase. Genes Cells.: 10, 333-44.

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  47. Kano F, Tanaka AR, Yamauchi S, Kondo H, and Murata M. (2004) Cdc2 kinase-dependent disassembly of endoplasmic reticulum (ER) exit sites inhibits ER-to-Golgi vesicular transport during mitosis. Mol. Biol. Cell.: 15, 4289-4298.

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  48. Nadanaka S, Yoshida H, Kano F, Murata M, and Mori K. (2004) Activation of Mammalian Unfolded Protein Response Is Compatible with the Quality Control System Operating in the Endoplasmic Reticulum. Mol. Biol. Cell.: 15, 2537-2548.

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  49. Uchiyama K, Jokitalo E, Lindman M, Jackman M, Kano F, Murata M, Zhang X, and Kondo H. (2003) The localization and phosphorylation of p47 are important for Golgi disassembly-assembly during the cell cycle. J. Cell Biol.: 161, 1067-1079.

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  50. Yuasa-Kawada J, Suzuki R, Kano F, Ohkawara T, Murata M, and Noda M. (2003) Axonal morphogenesis controlled by antagonistic roles of two CRMP subtypes in microtubule organization. Eur. J. Neurosci.: 17, 2329-2343.

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  51. Tanaka AR, Abe-Dohmae S, Ohnishi T, Aoki R, Morinaga G, Okuhira K, Ikeda Y, Kano F, Matsuo M, Kioka N, Amachi T, Murata M, Yokoyama S, and Ueda K. (2003) Effects of mutations of ABCA1 in the first extracellular domain on subcellular trafficking and ATP binding/ hydrolysis. J. Biol. Chem.: 278, 8815-8819.

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  52. Uchiyama K, Jokitalo E, Kano F, Murata M, Zhang X, Canas B, Newman R, Rabouille C, Pappin D, Freemont P, and Kondo H. (2002) VCIP135, a novel essential factor for p97/p47-mediated memrane fusion, is required for Golgi and ER assembly in vivo. J. Cell Biol.: 159, 855-866.

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  53. Kano F, Takenaka K, Yamamoto A, Nagayama K, Nishida E, and Murata M. (2000) MEK and Cdc2 kinase are sequentially required for Golgi disassembly in MDCK cells by the mitotic Xenopus extracts. J. Cell Biol.: 149, 357-368.

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  54. Kano F, Nagayama K, and Murata M. (2000) Reconstitution of the Golgi reassembly process in semi-intact MDCK cells. Biophys. Chem.: 84, 261-268.

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  55. Kano F, Sako Y, Tagaya M, Yanagida T, and Murata M. (2000) Reconstitution of brefeldin A-induced Golgi-tubulation and fusion with the ER in semi-intact CHO cells. Mol. Biol. Cell: 11, 3073-3087.

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総説

  1. 「セミインタクト細胞リシール技術を用いた新しい細胞編集・細胞デザイン」加納ふみ、國重莉奈: 細胞、Vol. 54、No. 4、 pp. 12-15、(2022)

  2. 「リシール細胞技術を用いた「細胞編集」」村田昌之、加納ふみ：医学のあゆみ、275巻1号、144-148. (2020)

  3. Kunishige, R., Kano, F., Murata, M. (2019) The cell resealing technique for manipulating, visualizing, and elucidating molecular functions in living cells. Biochim. Biophys. Acta (BBA) – Gen. Subj., S0304-4165 (19): 30071-30076. doi: 10.1016/j.bbagen.2019.03.015.

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  4. 「セミインタクト細胞リシール技術の新展開：「再構成」から「細胞編集」まで」村田昌之、加納ふみ：生化学、90巻4号、433-443. (2018)

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  5. 「セミインタクト細胞リシール技術を用いた細胞機能解析」國重莉奈、加納ふみ、村田昌之：生体の科学、69巻3号、247-251.(2018)

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  6. 「ブルセラ・アボルタス菌の細胞内増殖を制御する新規宿主因子Yip1A」田口由起、加納ふみ、村田昌之：生化学、88巻1号、139-143. (2016)

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  7. 「細胞内生命現象の再構成：病態モデル細胞構築への応用」加納ふみ、村田昌之：生体の科学、65巻5号、494-495. (2014)

  8. 「セミインタクト細胞リシール法を用いた細胞内イベントの可視化解析―「一細胞生物学」の細胞側ツールとして―」村田昌之、野口誉之、堀内雄太、堀井咲耶、加納ふみ：生物物理、Vol. 54 No.4, 206-209.（2014）

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  9. 「セミインタクト細胞リシール技術を用いた病態モデル細胞創成とその細胞工学的応用」加納ふみ、堀内雄太、野口誉之、村田昌之：細胞工学、Vol. 31 No.12,1376-1382. 秀潤社（2012）

  10. 「哺乳動物細胞ゴルジ体の細胞周期依存的ディスアッセンブリー」加納ふみ、村田昌之：生体の科学、63巻5号、404-407. (2012)

  11. 「新しい機能を問われ出した小胞体-ゴルジ体中間区画 (ER-Golgi intermediate compartment: ERGIC)」菅原太一、加納ふみ、村田昌之：生体の科学、63巻5号、424-425. (2012)

  12. 「セミインタクト細胞リシール法を用いた「病態モデル細胞」作製とその疾患研究への応用」村田昌之、加納ふみ：化学と生物、Vol.50(No.7) pp510-517. (2012)

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  13. 「細胞染色のためのプローブ：小胞輸送ネットワーク内のオルガネラ・膜小胞」日原さえら、加納ふみ、村田昌之：蛍光・発光試薬トコトン活用法、pp90-94、羊土社（2007）

  14. 「細胞周期依存的なオルガネラ形態変化と細胞内小胞輸送のカップリング」加納ふみ、村田昌之：蛋白質・核酸・酵素、Vol.52 No.11, pp1344-1350、共立出版（2007）

  15. 「セミインタクト細胞を用いた細胞内ネットワークの可視化解析」加納ふみ、安達淳博、村田昌之：顕微鏡、42(2), 143-145.（2007）

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  16. 「セミインタクト細胞を用いた細胞内イベントの可視化解析」山内忍、田中亜路、加納ふみ、村田昌之：生物物理、pp.153-156、45巻（2005）

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  17. 「セミインタクト細胞アッセイ」村田昌之、木原隆典、加納ふみ：リポソーム応用の新展開　人工細胞の開発に向けて、pp.312-318、（2005）

  18. 「セミインタクト細胞アッセイ系の構築」加納ふみ，村田昌之：実験医学、Vol. 22 (No.16)、pp.2307-2311、羊土社（2004）

  19. 「セミインタクト細胞を用いた細胞内タンパク質の動態・機能の解析技術の開発」田中亜路、山内忍、加納ふみ、村田昌之：BIOINDUSTRY、Vol. 21(No.6)、 pp.28-35、シーエムシー出版（2004）

  20. 「GFP可視化技術を用いたオルガネラ動態観察」加納ふみ，村田昌之：実験医学別冊「培養細胞実験ハンドブック」（黒木敏雄，許南浩　編）pp.120-123、、羊土社（2004）

  21. 「細胞分裂時におけるオルガネラの分配則」村田昌之、加納ふみ：実験医学、Vol. 21 (No.18)、pp.2580-2581、羊土社（2003）

  22. 「哺乳動物細胞オルガネラの細胞周期依存的ダイナミクス」田中亜路、加納ふみ、村田昌之：生物物理、Vol. 241、pp.116-121、（2002）

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  23. 「細胞内小胞輸送ネットワークの可視化解析」加納ふみ、田中亜路、村田昌之：実験医学、Vol. 20 (No.7)、pp.961-967、羊土社（2002）

  24. 「セミインタクト細胞を用いたタンパク質の細胞内ターゲティングとオルガネラバイオジェネシスの研究」加納ふみ、田中亜路、村田昌之：実験医学、Vol. 20、pp.961-967、羊土社（2002）

  25. 「セミインタクト細胞とGFPを用いたメンブレントラフィックの研究」村田昌之、加納ふみ：実験医学別冊「GFPとバイオイメージング」（宮脇敦史編）、pp.259-265、羊土社（2000）

  26. 「膜の動きを観て、操作する」加納ふみ、村田昌之：細胞工学、Vol. 19、No.7、pp.1023-1029、秀潤社 (2000)

著作

  1. Kano, F., Murata, M. (2019) Semi-intact cell system for reconstituting and analyzing cellular Golgi dynamics. The Golgi Apparatus and Centriole. 19 : 233-250. doi:110.1007/978-3-030-23173-6_10.

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  2. 「セミインタクト細胞リシール技術を用いた糖尿病モデル細胞アレイとその解析法」 加納ふみ、野口誉之、村田昌之：バイオテクノロジーシリーズ『臓器チップの技術と開発動向』（監修：酒井康行、金森敏幸）pp. 222-229、シーエムシー出版

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  3. 「病態モデル細胞の創成と新展開 ー未来のナノメディシンに資する新しい細胞編集技術−」 村田昌之、加納ふみ：キヤノン財団ライブラリー『ナノテクノロジーが拓く未来の医療』（片岡一則編著）pp. 228-249、丸善プラネット（2017）

  4. “Reconstitution of Golgi disassembly by mitotic Xenopus egg extracts in semi-intact MDCK cells” Kano F, Takenaka K, and Murata M：”Xenopus protocol; methods in molecular biology (X. Johne Liu ed.)”、pp.357-365、Humana Press (2006)

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  5. 「細胞内小胞輸送ネットワークにおけるゴルジ体のダイナミクス」村田昌之、加納ふみ：シリーズ・ニューバイオフィジクスII 4巻『生体膜のダイナミクス』（八田一郎、村田昌之編）pp.119-138、共立出版 (2000)